P. Pradhan, A. Srivastava, J. Singh, B. Biswas, A. Saini, I. Siddique, P. Kumari, M. A. Khan, A. Mishra, P. K. Yadav, and . Others,"Prion protein transcription is auto-regulated through dynamic interactions with G-quadruplex motifs in its own promoter", BBA - Gene Regulatory Mechanisms, vol.1863, no.3, pp.194479, Elsevier 2020, View Details       Article

A. Mishra, S. Dhanda, P. Siwach, S. Aggarwal, and B. Jayaram,"A novel method SEProm for prokaryotic promoter prediction based on DNA structure and energetics", Bioinformatics, vol.36, no.8, pp.2375--2384, Oxford University Press 2020, View Details       Article

A. Mishra, P. Siwach, P. Singhal, and B. Jayaram,"ChemGenome2.1: An ab initio gene prediction software", Methods in Molecular Biology, ch.7, vol.1962, pp.121–138, Humana, New York, NY 2019, View Details       Inbook

A. Mishra, P. Siwach, P. Misra, B. Jayaram, M. Bansal, W. K. Olson, K. M. Thayer, and D. L. Beveridge,"Toward a universal structural and energetic model for prokaryotic promoters", Biophysical Journal, vol.115, no.7, pp.1180--1189, Elsevier 2018, View Details       Article

A. Mishra, P. Pant, and B. Jayaram,"Generating hit molecules against pathogenic DNA motifs in silico", Atlas of Science, Springer 2018, View Details       Article

A. Mishra, P. Pant, and B. Jayaram,"Onco-Plus: An integrated database and a computational protocol for discovery of lead molecules targeting unique DNA sequences", in J Mol Genet Med, Hilaris Publishing SRL 2018, View Details       Inproceedings

A. Mishra, P. Siwach, and B. Jayaram,"ChemGenome: an ab initio method for prokaryotic genome annotation", in VEPTC Conference Proceedings, pp.38, 05 2018, View Details       Inproceedings

A. Mishra, P. Pant, N. Mrinal, and B. Jayaram,"A computational protocol for the discovery of lead molecules targeting dna unique to pathogens", Methods, vol.131, pp.4--9, Elsevier 2017, View Details       Article

A. Mishra, S. Aggarwal, N. Mrinal, and B. Jayaram,"Onco-Regulon: an Integrated database and software suite for site specific targeting of transcription factors", in Journal of Protein and Proteomics, vol.8, no.3, pp.12, Springer Nature 2017, View Details       Inproceedings

A. Mishra, P. Pant, N. Mrinal, and B. Jayaram,"An in silico approach to discover lead molecules targeting DNA unique to pathogens", in Journal of Protein and Proteomics, vol.8, no.3, pp.19, Springer Nature, p-15 2017, View Details       Inproceedings