All Publications

D. Sharma, K. Sharma, A. Mishra, P. Siwach, A. Mittal, and B. Jayaram,"Molecular dynamics simulation-based trinucleotide and tetranucleotide level structural and energy characterization of the functional units of genomic DNA", Physical Chemistry Chemical Physics, vol.25, no.10, pp.7323-7337, Royal Society of Chemistry 2023, 10.1039/d2cp04820e       Article

G. Prakasam, A. Mishra, A. Christie, J. Miyata, V. Tcheuyap, Hui. Ye, Q. Do, K. Jones, M. Requena-Komuro, I. Pedrosa, D. Rakheja, P. Kapur, and J. Brugarolas,"Comparative genomic analysis of novel translocation renal cell carcinoma model reveals molecular mechanisms of disease progression and therapeutic opportunities", in Cancer Research, vol.83, no.16, pp.pr004, American Association for Cancer Research 2023, 10.1158/1538-7445.KIDNEY23-PR004       Inproceedings

Y. Ma, A. Joyce, O. Brandenburg, F. Saatchi, C. Stevens, V. T. Tcheuyap, A. Christie, Q. Do, O. Fatunde, A. Macchiaroli, . Others, A. Mishra, and . Others,"HIF2 inactivation and tumor suppression with a tumor-directed RNA-targeting drug in mice and humans", Clinical Cancer Research, vol.28, no.24, pp.5405--5418, American Association for Cancer Research 2022, View Details       Article

O. R. Torras, A. Mishra, A. Christie, T. Mckenzie, O. Onabolu, N. Singla, E. R. Plimack, C. Suárez, M. Ornstein, R. K. Alpaugh, Roy. Elias, I. A. Bowman, R. Mckay, C. Przybycin, P. Kapur, and J. Brugarolas,"Molecular genetic determinants of shorter time on active surveillance in a prospective phase 2 clinical trial in metastatic renal cell carcinoma", European Urology, vol.81, no.6, pp.555–558, Elsevier 2022, View Details       Article

A. Mishra, P. Siwach, P. Misra, S. Dhiman, A. K. Pandey, P. Srivastava, and B. Jayaram,"Intron exon boundary junctions in human genome have in-built unique structural and energetic signals", Nucleic Acids Research, vol.49, no.5, pp.2674--2683, Oxford University Press 2021, View Details       Article

P. Pradhan, A. Srivastava, J. Singh, B. Biswas, A. Saini, I. Siddique, P. Kumari, M. A. Khan, A. Mishra, P. K. Yadav, and . Others,"Prion protein transcription is auto-regulated through dynamic interactions with G-quadruplex motifs in its own promoter", BBA - Gene Regulatory Mechanisms, vol.1863, no.3, pp.194479, Elsevier 2020, View Details       Article

A. Mishra, S. Dhanda, P. Siwach, S. Aggarwal, and B. Jayaram,"A novel method SEProm for prokaryotic promoter prediction based on DNA structure and energetics", Bioinformatics, vol.36, no.8, pp.2375--2384, Oxford University Press 2020, View Details       Article

A. Mishra, P. Siwach, P. Singhal, and B. Jayaram,"ChemGenome2.1: An ab initio gene prediction software", Methods in Molecular Biology, ch.7, vol.1962, pp.121–138, Humana, New York, NY 2019, View Details       Inbook

A. Mishra, P. Siwach, P. Misra, B. Jayaram, M. Bansal, W. K. Olson, K. M. Thayer, and D. L. Beveridge,"Toward a universal structural and energetic model for prokaryotic promoters", Biophysical Journal, vol.115, no.7, pp.1180--1189, Elsevier 2018, View Details       Article

A. Mishra, P. Pant, and B. Jayaram,"Generating hit molecules against pathogenic DNA motifs in silico", Atlas of Science, Springer 2018, View Details       Article